Areejit Samal: search on Z-Library

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1

Preferential attachment renders an evolving network of populations robust against crashes

Areejit Samal, Hildegard Meyer-Ortmanns

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

2009

Language:

english

File:

PDF, 1.55 MB

english, 2009

2

Targeting multiple targets in Pseudomonas aeruginosa PAO1 using flux balance analysis of a reconstructed genome-scale metabolic network

Perumal, Deepak, Samal, Areejit, Sakharkar, Kishore R., Sakharkar, Meena K.

Journal:

Journal of Drug Targeting

Year:

2011

Language:

english

File:

PDF, 764 KB

english, 2011

3

Forman curvature for complex networks

Sreejith, R P, Mohanraj, Karthikeyan, Jost, Jürgen, Saucan, Emil, Samal, Areejit

Journal:

Journal of Statistical Mechanics Theory and Experiment

Year:

2016

Language:

english

File:

PDF, 5.53 MB

english, 2016

4

Systematic evaluation of a new combinatorial curvature for complex networks

Sreejith, R.P., Jost, Jürgen, Saucan, Emil, Samal, Areejit

Journal:

Chaos, Solitons & Fractals

Year:

2017

Language:

english

File:

PDF, 5.02 MB

english, 2017

5

Network approach towards understanding the crazing in glassy amorphous polymers

Venkatesan, Sudarkodi, Vivek-Ananth, R P, Sreejith, R P, Mangalapandi, Pattulingam, Hassanali, Ali A, Samal, Areejit

Journal:

Journal of Statistical Mechanics Theory and Experiment

Year:

2018

Language:

english

File:

PDF, 3.03 MB

english, 2018

6

Comparative analysis of two discretizations of Ricci curvature for complex networks

Samal, Areejit, Sreejith, R. P., Gu, Jiao, Liu, Shiping, Saucan, Emil, Jost, Jürgen

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 2.98 MB

english, 2018

7

Challenges in experimental data integration within genome-scale metabolic models

Pierre-Yves Bourguignon, Areejit Samal, François Képès, Jürgen Jost, Olivier C Martin

Journal:

Algorithms for Molecular Biology

Year:

2010

Language:

english

File:

PDF, 354 KB

english, 2010

8

Environmental versatility promotes modularity in genome-scale metabolic networks

Areejit Samal, Andreas Wagner, Olivier C Martin

Journal:

BMC Systems Biology

Year:

2011

Language:

english

File:

PDF, 304 KB

english, 2011

9

Conservation of high-flux backbone in alternate optimal and near-optimal flux distributions of metabolic networks

Journal:

Systems and Synthetic Biology

Year:

2008

Language:

english

File:

PDF, 417 KB

english, 2008

10

Learning and structure of neuronal networks

KIRAN M KOLWANKAR, QUANSHENG REN, AREEJIT SAMAL, JÜRGEN JOST

Journal:

Year:

2011

Language:

english

File:

PDF, 260 KB

english, 2011

11

STDP-driven networks and the C. elegans neuronal network

Quansheng Ren, Kiran M. Kolwankar, Areejit Samal, Jürgen Jost

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

2010

Language:

english

File:

PDF, 1.23 MB

english, 2010

12

Low degree metabolites explain essential reactions and enhance modularity in biological networks

Areejit Samal, Shalini Singh, Varun Giri, Sandeep Krishna, Nandula Raghuram, Sanjay Jain

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 325 KB

english, 2006

13

The regulatory network ofE. colimetabolism as a Boolean dynamical system exhibits both homeostasis and flexibility of response

Areejit Samal, Sanjay Jain

Journal:

BMC Systems Biology

Year:

2008

Language:

english

File:

PDF, 786 KB

english, 2008

14

Genotype networks in metabolic reaction spaces

Areejit Samal, João F Matias Rodrigues, Jürgen Jost, Olivier C Martin, Andreas Wagner

Journal:

BMC Systems Biology

Year:

2010

Language:

english

File:

PDF, 1.37 MB

english, 2010

15

Network function shapes network structure: the case of the Arabidopsis flower organ specification genetic network

Henry, Adrien, Monéger, Françoise, Samal, Areejit, Martin, Olivier C.

Journal:

Molecular BioSystems

Year:

2013

Language:

english

File:

PDF, 2.21 MB

english, 2013

16

Hopf bifurcation in the evolution of networks driven by spike-timing-dependent plasticity

Ren, Quansheng, Kolwankar, Kiran M., Samal, Areejit, Jost, Jürgen

Journal:

Physical Review E

Year:

2012

Language:

english

File:

PDF, 1.48 MB

english, 2012

17

Flux-based classification of reactions reveals a functional bow-tie organization of complex metabolic networks

Singh, Shalini, Samal, Areejit, Giri, Varun, Krishna, Sandeep, Raghuram, Nandula, Jain, Sanjay

Journal:

Physical Review E

Year:

2013

Language:

english

File:

PDF, 2.06 MB

english, 2013

18

Analysis of the hierarchical structure of the B. subtilis transcriptional regulatory network

Kumar, Santhust, Vendruscolo, Michele, Singh, Amit, Kumar, Dhiraj, Samal, Areejit

Journal:

Molecular BioSystems

Year:

2015

Language:

english

File:

PDF, 2.30 MB

english, 2015

19

Statistical Physics Methods Provide the Exact Solution to a Long-Standing Problem of Genetics

Samal, Areejit, Martin, Olivier C.

Journal:

Physical Review Letters

Year:

2015

Language:

english

File:

PDF, 541 KB

english, 2015

20

Cloning and Targeted Disruption of Two Lipopolysaccharide Biosynthesis Genes, kdsA and waaG, of Pseudomonas aeruginosa PAO1 by Site-Directed Mutagenesis

Perumal, Deepak, Sakharkar, Kishore R., Tang, Thean Hock, Chow, Vincent T.K., Lim, Chu Sing, Samal, Areejit, Sugiura, Norio, Sakharkar, Meena K.

Journal:

Journal of Molecular Microbiology and Biotechnology

Year:

2010

Language:

english

File:

PDF, 1.20 MB

english, 2010

21

Relative stability of network states in Boolean network models of gene regulation in development

Zhou, Joseph Xu, Samal, Areejit, d’Hérouël, Aymeric Fouquier, Price, Nathan D., Huang, Sui

Journal:

Year:

2016

Language:

english

File:

PDF, 1.95 MB

english, 2016

22

Comparative proteomic analyses of avirulent, virulent and clinical strains of Mycobacterium tuberculosis identifies strain-specific patterns

Jhingan, Gagan Deep, Kumari, Sangeeta, Jamwal, Shilpa V., Kalam, Haroon, Arora, Divya, Jain, Neharika, KrishnaKumaar, Lakshmi, Samal, Areejit, Rao, Kanury V. S., Kumar, Dhiraj, Nandicoori, Vinay Kumar

Journal:

Journal of Biological Chemistry

Year:

2016

Language:

english

File:

PDF, 3.24 MB

english, 2016

23

Advances in the integration of transcriptional regulatory information into genome-scale metabolic models

Vivek-Ananth, R.P., Samal, Areejit

Journal:

Year:

2016

Language:

english

File:

PDF, 2.18 MB

english, 2016

24

Phenotypic constraints promote latent versatility and carbon efficiency in metabolic networks

Bardoscia, Marco, Marsili, Matteo, Samal, Areejit

Journal:

Physical Review E

Year:

2015

Language:

english

File:

PDF, 319 KB

english, 2015

25

Haldane, Waddington and recombinant inbred lines: extension of their work to any number of genes

Samal, Areejit, Martin, Olivier C.

Journal:

Journal of Genetics

Year:

2017

Language:

english

File:

PDF, 724 KB

english, 2017

26

IMPPAT: A curated database of Indian Medicinal Plants, Phytochemistry And Therapeutics

Mohanraj, Karthikeyan, Karthikeyan, Bagavathy Shanmugam, Vivek-Ananth, R. P., Chand, R. P. Bharath, Aparna, S. R., Mangalapandi, Pattulingam, Samal, Areejit

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 6.11 MB

english, 2018

27

Comparative systems analysis of the secretome of the opportunistic pathogen Aspergillus fumigatus and other Aspergillus species

Vivek-Ananth, R. P., Mohanraj, Karthikeyan, Vandanashree, Muralidharan, Jhingran, Anupam, Craig, James P., Samal, Areejit

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 3.52 MB

english, 2018

28

Network reconstruction and systems analysis of plant cell wall deconstruction by Neurospora crassa

Samal, Areejit, Craig, James P., Coradetti, Samuel T., Benz, J. Philipp, Eddy, James A., Price, Nathan D., Glass, N. Louise

Journal:

Biotechnology for Biofuels

Year:

2017

Language:

english

File:

PDF, 1.95 MB

english, 2017

29

A curated knowledgebase on endocrine disrupting chemicals and their biological systems-level perturbations

Karthikeyan, Bagavathy Shanmugam, Ravichandran, Janani, Mohanraj, Karthikeyan, Vivek-Ananth, R.P., Samal, Areejit

Journal:

Science of The Total Environment

Year:

2019

Language:

english

File:

PDF, 2.98 MB

english, 2019

30

Persistent homology of unweighted complex networks via discrete Morse theory

Kannan, Harish, Saucan, Emil, Roy, Indrava, Samal, Areejit

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 3.66 MB

english, 2019

31

In Silico Identification of Potential Natural Product Inhibitors of Human Proteases Key to SARS-CoV-2 Infection

Vivek-Ananth, R.P., Rana, Abhijit, Rajan, Nithin, Biswal, Himansu S., Samal, Areejit

Journal:

Year:

2020

File:

PDF, 9.32 MB

2020

32

Forman-Ricci curvature and persistent homology of unweighted complex networks

Roy, Indrava, Vijayaraghavan, Sudharsan, Ramaia, Sarath Jyotsna, Samal, Areejit

Journal:

Chaos, Solitons & Fractals

Year:

2020

File:

PDF, 1.96 MB

2020

33

DEDuCT 2.0: An updated knowledgebase and an exploration of the current regulations and guidelines from the perspective of endocrine disrupting chemicals

Karthikeyan, Bagavathy Shanmugam, Ravichandran, Janani, Aparna, S.R., Samal, Areejit

Journal:

Year:

2020

File:

PDF, 1.37 MB

2020

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